Home › Forums › Linear Regression › Multiple linear regression with Python, numpy, matplotlib, plot in 3d
Tagged: multiple linear regression
 This topic has 0 replies, 1 voice, and was last updated 1 year, 10 months ago by Charles Durfee.

AuthorPosts

December 28, 2018 at 7:24 pm #1499Charles DurfeeKeymaster
Background info / Notes:
Equation:
Multiple regression: Y = b0 + b1*X1 + b2*X2 + … +bnXn
compare to Simple regression: Y = b0 + b1*XIn English:
Y is the predicted value of the dependent variable
X1 through Xn are n distinct independent variables
b0 is the value of Y when all of the independent variables (X1 through Xn) are equal to zero
b1 through bn are the slope of the relationship between the dependent variable and the independed variable that is holding constant of all other independent variables.Think of it as a system of equations:
Y1 = (b + mX1) + e1
Y2 = (b + mX2) + e2
…
Yn = (b + mXn) + en
We can then set up a matrix equation with the following matrices:Y1
Y = …..
Yn1 X1
X = . ..
1 Xnb
A = me1
E = …..
en
Which gives us the matrix equation: Y = XA + E
We just need to solve for AUse Linear Algebra to solve
Equation:
A = (X^T * X)^1 * (X^T * Y)Two helpful links that explain how we get this equation:
https://www.youtube.com/watch?v=Qa_FI92_qo8
https://www.youtube.com/watch?v=qdOG7YMolmAConvert the equation to code:
Using the np.linalg.solve function we will not need to invert the first term
a = np.linalg.solve(np.dot(X.T, X), np.dot(X.T, Y))You can download the code or dataset from github here.
The full code:
import numpy as np import matplotlib.pyplot as plt from mpl_toolkits.mplot3d import Axes3D # create arrays for the data points X = [] Y = [] #read the csv file csvReader = open('BloodPressure.csv') #skips the header line csvReader.readline() for line in csvReader: y, x1, x2 = line.split(',') X.append([float(x1), float(x2), 1]) # add the bias term at the end Y.append(float(y)) # use numpy arrays so that we can use linear algebra later X = np.array(X) Y = np.array(Y) # graph the data fig = plt.figure(1) ax = fig.add_subplot(111, projection='3d') ax.scatter(X[:, 0], X[:, 1], Y) ax.set_xlabel('Age') ax.set_ylabel('Weight') ax.set_zlabel('Blood Pressure') # Use Linear Algebra to solve a = np.linalg.solve(np.dot(X.T, X), np.dot(X.T, Y)) predictedY = np.dot(X, a) # calculate the rsquared SSres = Y  predictedY SStot = Y  Y.mean() rSquared = 1  (SSres.dot(SSres) / SStot.dot(SStot)) print("the rsquared is: ", rSquared) print("the coefficient (value of a) for age, weight, constant is: ", a) # create a wiremesh for the plane that the predicted values will lie xx, yy, zz = np.meshgrid(X[:, 0], X[:, 1], X[:, 2]) combinedArrays = np.vstack((xx.flatten(), yy.flatten(), zz.flatten())).T Z = combinedArrays.dot(a) # graph the original data, predicted data, and wiremesh plane fig = plt.figure(2) ax = fig.add_subplot(111, projection='3d') ax.scatter(X[:, 0], X[:, 1], Y, color='r', label='Actual BP') ax.scatter(X[:, 0], X[:, 1], predictedY, color='g', label='Predicted BP') ax.plot_trisurf(combinedArrays[:, 0], combinedArrays[:, 1], Z, alpha=0.5) ax.set_xlabel('Age') ax.set_ylabel('Weight') ax.set_zlabel('Blood Pressure') ax.legend() plt.show()

AuthorPosts
 You must be logged in to reply to this topic.